<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.3 20210610//EN" "JATS-journalpublishing1-3.dtd">
<article article-type="review-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">clinmed</journal-id><journal-title-group><journal-title xml:lang="ru">Клиническая медицина</journal-title><trans-title-group xml:lang="en"><trans-title>Clinical Medicine (Russian Journal)</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">0023-2149</issn><issn pub-type="epub">2412-1339</issn><publisher><publisher-name>ООО «Медицинское информационное агентство»</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.30629/0023-2149-2024-102-4-297-308</article-id><article-id custom-type="elpub" pub-id-type="custom">clinmed-810</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>ОБЗОРЫ И ЛЕКЦИИ</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>REVIEWS AND LECTURES</subject></subj-group></article-categories><title-group><article-title>Кишечная микробиота: новые возможности диагностики и лечения</article-title><trans-title-group xml:lang="en"><trans-title>Gut microbiome: new diagnostic and treatment options</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-6114-564X</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Маев</surname><given-names>И. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Mayev</surname><given-names>I. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Маев Игорь Вениаминович — д-р мед. наук, профессор, академик РАН, первый проректор, заведующий кафедрой пропедевтики внутренних болезней и гастроэнтерологии</p></bio><bio xml:lang="en"><p>Igor V. Mayev — Dr. of Sci. (Med.), Professor, Academician of the Russian Academy of Sciences, First Vice-Rector, Head of the Department of Propaedeutics of Internal Diseases and Gastroenterology</p></bio><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-8300-8988</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Лямина</surname><given-names>С. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Lyamina</surname><given-names>S. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Лямина Светлана Владимировна — д-р мед. наук, профессор кафедры пропедевтики внутренних болезней и гастроэнтерологии, заведующая лабораторией молекулярной патологии пищеварениянаучно-исследовательского центра биомедицинских исследований</p></bio><bio xml:lang="en"><p>Svetlana V. Lyamina — Dr. of Sci. (Med.), Professor of the Department of Propaedeutics of Internal Diseases and Gastroenterology, Head of the Laboratory of Molecular Pathology of Digestion of the Research Centerfor Biomedical Research</p></bio><email xlink:type="simple">svlvs@mail.ru</email><xref ref-type="aff" rid="aff-1"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru">ФГБОУ ВО «Московский государственный медико-стоматологический университет им. А.И. Евдокимова» Минздрава России<country>Россия</country></aff><aff xml:lang="en">A.I. Yevdokimov Moscow State University of Medicine and Dentistry of the Ministry of Health of the Russia<country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2024</year></pub-date><pub-date pub-type="epub"><day>23</day><month>07</month><year>2024</year></pub-date><volume>102</volume><issue>4</issue><fpage>297</fpage><lpage>308</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Маев И.В., Лямина С.В., 2024</copyright-statement><copyright-year>2024</copyright-year><copyright-holder xml:lang="ru">Маев И.В., Лямина С.В.</copyright-holder><copyright-holder xml:lang="en">Mayev I.V., Lyamina S.V.</copyright-holder><license license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://www.clinmedjournal.com/jour/article/view/810">https://www.clinmedjournal.com/jour/article/view/810</self-uri><abstract><p>Микробиота кишечника вносит неоспоримый вклад в функционирование многочисленных систем организма, включая высшую нервную деятельность и поведенческие реакции, в значительной части предопределяет активность иммунной системы. К настоящему времени накоплен большой объем знаний о значимости состава, разнообразия и функциональных свойств микробиоты кишечника как для поддержания состоянии здоровья человека, так и для формирования целого ряда заболеваний. Изменения в организме человека неизбежно сопровождаются изменениями видового состава, разнообразия микробиоты. Установлены определенные закономерности изменения микробиома кишечника человека в течение жизни, а также изменения его функциональной активности под влиянием внешних факторов, пищевых пристрастий. Обзор, выполненный по результатам поиска в базах данных и электронных библиотеках PubMed (MEDLINE), Embase, Cochrane Library, Google Scholar, eLibrary в период с 2012 по 2023 г., посвящен анализу микробиоты кишечника как маркера и предиктора хронических социально значимых неинфекционных заболеваний, а также неотъемлемого компонента достижения здоровья в условиях персонализированного подхода современных терапевтических стратегий.</p></abstract><trans-abstract xml:lang="en"><p>The gut microbiome is of undeniable contribution to the functioning of numerous human organ systems, including higher nervous activity and behavioral reactions, and largely determines the activity of the immune system. To date, a large amount of knowledge has been accumulated about the importance of the composition, diversity and functional properties of the gut microbiota both for maintaining the human body in a state of health and for the development of pathology. Changes in the human organism are inevitably accompanied by changes in species composition and microbiome diversity. Certain patterns of changes in the human gut microbiome throughout life, as well as changes in its functional activity under the infl uence of external factors and food preferences. This research is based on search results in databases and electronic libraries PubMed (MEDLINE), Embase, Cochrane Library, Google Scholar, eLibrary in the period from 2012 to 2023. The review is devoted to the analysis of gut microbiome as a marker and predictor of chronic socially signifi cant non-communicable diseases, as well as an integral component of health gain in the context of a personalized approach of modern therapeutic strategies.  </p></trans-abstract><kwd-group xml:lang="ru"><kwd>микробиота кишечника</kwd><kwd>влияние внешних факторов.</kwd></kwd-group><kwd-group xml:lang="en"><kwd>gut microbiome</kwd><kwd>infl uence of external factors</kwd></kwd-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Lynch S.V., Ng S.C., Shanahan F. et al. Translating the gut microbiome: ready for the clinic? Nat. Rev. Gastroenterol. Hepatol. 2019;16:656–661.</mixed-citation><mixed-citation xml:lang="en">Lynch S.V., Ng S.C., Shanahan F. et al. Translating the gut microbiome: ready for the clinic? Nat. Rev. Gastroenterol. Hepatol. 2019;16:656–661.</mixed-citation></citation-alternatives></ref><ref id="cit2"><label>2</label><citation-alternatives><mixed-citation xml:lang="ru">Liu Y.-X., Chen T., Li D. et al. iMeta: integrated meta-omics for biology and environments. iMeta. 2022;1:e15.</mixed-citation><mixed-citation xml:lang="en">Liu Y.-X., Chen T., Li D. et al. iMeta: integrated meta-omics for biology and environments. iMeta. 2022;1:e15.</mixed-citation></citation-alternatives></ref><ref id="cit3"><label>3</label><citation-alternatives><mixed-citation xml:lang="ru">Li W., Wang L., Li X. et al. Sequence-based functional metagenomics reveals novel natural diversity of functioning CopA in environmental microbiomes. Genom. Proteom. Bioinform. 2022. DOI:10.1101/2022.02.12.480192</mixed-citation><mixed-citation xml:lang="en">Li W., Wang L., Li X. et al. Sequence-based functional metagenomics reveals novel natural diversity of functioning CopA in environmental microbiomes. Genom. Proteom. Bioinform. 2022. DOI:10.1101/2022.02.12.480192</mixed-citation></citation-alternatives></ref><ref id="cit4"><label>4</label><citation-alternatives><mixed-citation xml:lang="ru">Wang B., Yao M., Lv L., Ling Z., Li L. The human microbiota in health and disease. Engineering. 2017;3:71–82. 10.1016/J.ENG.2017.01.008</mixed-citation><mixed-citation xml:lang="en">Wang B., Yao M., Lv L., Ling Z., Li L. The human microbiota in health and disease. Engineering. 2017;3:71–82. 10.1016/J.ENG.2017.01.008</mixed-citation></citation-alternatives></ref><ref id="cit5"><label>5</label><citation-alternatives><mixed-citation xml:lang="ru">Relman D.A. The human microbiome: ecosystem resilience and health. Nutr. Rev. 2012;70(1):S2 –9. DOI: 10.1111/j.1753-4887.2012.00489.x</mixed-citation><mixed-citation xml:lang="en">Relman D.A. The human microbiome: ecosystem resilience and health. Nutr. Rev. 2012;70(1):S2 –9. DOI: 10.1111/j.1753-4887.2012.00489.x</mixed-citation></citation-alternatives></ref><ref id="cit6"><label>6</label><citation-alternatives><mixed-citation xml:lang="ru">Sender R., Fuchs S., Milo R. Revised Estimates for the Number of Human and Bacteria Cells in the Body. PLoS Biol. 2016;14:e1002533. DOI: 10.1371/journal.pbio.1002533</mixed-citation><mixed-citation xml:lang="en">Sender R., Fuchs S., Milo R. Revised Estimates for the Number of Human and Bacteria Cells in the Body. PLoS Biol. 2016;14:e1002533. DOI: 10.1371/journal.pbio.1002533</mixed-citation></citation-alternatives></ref><ref id="cit7"><label>7</label><citation-alternatives><mixed-citation xml:lang="ru">Donaldson G.P., Lee S.M., Mazmanian S.K. Gut biogeography of the bacterial microbiota. Nat. Rev. Microbiol. 2016;14:20–32. DOI: 10.1038/nrmicro3552</mixed-citation><mixed-citation xml:lang="en">Donaldson G.P., Lee S.M., Mazmanian S.K. Gut biogeography of the bacterial microbiota. Nat. Rev. Microbiol. 2016;14:20–32. DOI: 10.1038/nrmicro3552</mixed-citation></citation-alternatives></ref><ref id="cit8"><label>8</label><citation-alternatives><mixed-citation xml:lang="ru">Goodrich J.K., Davenport E.R., Clark A.G., Ley R.E. The Relationship Between the Human Genome and Microbiome Comes into View. Annu. Rev. Genet. 2017;51:413–433. DOI: 10.1146/annurev-genet-110711-155532</mixed-citation><mixed-citation xml:lang="en">Goodrich J.K., Davenport E.R., Clark A.G., Ley R.E. The Relationship Between the Human Genome and Microbiome Comes into View. Annu. Rev. Genet. 2017;51:413–433. DOI: 10.1146/annurev-genet-110711-155532</mixed-citation></citation-alternatives></ref><ref id="cit9"><label>9</label><citation-alternatives><mixed-citation xml:lang="ru">Ahlawat S., Sharma K. K. Gut–organ axis: A microbial outreach and networking. Lett. Appl. Microbiol. 2021;72 :636–668. 10.1111/lam.13333</mixed-citation><mixed-citation xml:lang="en">Ahlawat S., Sharma K. K. Gut–organ axis: A microbial outreach and networking. Lett. Appl. Microbiol. 2021;72 :636–668. 10.1111/lam.13333</mixed-citation></citation-alternatives></ref><ref id="cit10"><label>10</label><citation-alternatives><mixed-citation xml:lang="ru">Manor O., Dai C.L., Kornilov S.A. et al. Health and disease markers correlate with gut microbiome composition across thousands of people. Nat. Commun. 2020;11:5206. DOI: 10.1038/s41467-020-18871-1</mixed-citation><mixed-citation xml:lang="en">Manor O., Dai C.L., Kornilov S.A. et al. Health and disease markers correlate with gut microbiome composition across thousands of people. Nat. Commun. 2020;11:5206. DOI: 10.1038/s41467-020-18871-1</mixed-citation></citation-alternatives></ref><ref id="cit11"><label>11</label><citation-alternatives><mixed-citation xml:lang="ru">Hajjo R., Sabbah D.A., Al Bawab A.Q. Unlocking the Potential of the Human Microbiome for Identifying Disease Diagnostic Biomarkers. Diagnostics (Basel). 2022;12(7):1742. DOI: 10.3390/diagnostics12071742</mixed-citation><mixed-citation xml:lang="en">Hajjo R., Sabbah D.A., Al Bawab A.Q. Unlocking the Potential of the Human Microbiome for Identifying Disease Diagnostic Biomarkers. Diagnostics (Basel). 2022;12(7):1742. DOI: 10.3390/diagnostics12071742</mixed-citation></citation-alternatives></ref><ref id="cit12"><label>12</label><citation-alternatives><mixed-citation xml:lang="ru">Marcos-Zambrano L.J. et al. Applications of machine learning in human microbiome studies: a review on feature selection, biomarker identifi cation, disease prediction and treatment. Front. Microbiol. 19 February 2021. DOI: 10.3389/fmicb.2021.634511</mixed-citation><mixed-citation xml:lang="en">Marcos-Zambrano L.J. et al. Applications of machine learning in human microbiome studies: a review on feature selection, biomarker identifi cation, disease prediction and treatment. Front. Microbiol. 19 February 2021. DOI: 10.3389/fmicb.2021.634511</mixed-citation></citation-alternatives></ref><ref id="cit13"><label>13</label><citation-alternatives><mixed-citation xml:lang="ru">Tyakht A.V., Kostryukova E.S., Maev I.V. et al. Human gut microbiota community structures in urban and rural populations in Russia. Nat. Commun. 2013;4:2469. DOI: 10.1038/ncomms3469. PMID: 24036685</mixed-citation><mixed-citation xml:lang="en">Tyakht A.V., Kostryukova E.S., Maev I.V. et al. Human gut microbiota community structures in urban and rural populations in Russia. Nat. Commun. 2013;4:2469. DOI: 10.1038/ncomms3469. PMID: 24036685</mixed-citation></citation-alternatives></ref><ref id="cit14"><label>14</label><citation-alternatives><mixed-citation xml:lang="ru">Sommer F., Bäckhed F. The gut microbiota — Masters of host development and physiology. Nat. Rev. Microbiol. 2013;11:227–238. DOI: 10.1038/nrmicro2974</mixed-citation><mixed-citation xml:lang="en">Sommer F., Bäckhed F. The gut microbiota — Masters of host development and physiology. Nat. Rev. Microbiol. 2013;11:227–238. DOI: 10.1038/nrmicro2974</mixed-citation></citation-alternatives></ref><ref id="cit15"><label>15</label><citation-alternatives><mixed-citation xml:lang="ru">Perry R.J., Peng L., Barry N.A., Cline G.W., Zhang D., Cardone R.L. et al. Acetate mediates a microbiome-brain-β cell axis promoting metabolic syndrome. Nature. 2016;7606:213–217. DOI: 10.1038/ nature18309</mixed-citation><mixed-citation xml:lang="en">Perry R.J., Peng L., Barry N.A., Cline G.W., Zhang D., Cardone R.L. et al. Acetate mediates a microbiome-brain-β cell axis promoting metabolic syndrome. Nature. 2016;7606:213–217. DOI: 10.1038/ nature18309</mixed-citation></citation-alternatives></ref><ref id="cit16"><label>16</label><citation-alternatives><mixed-citation xml:lang="ru">McRae M.P. Dietary fi ber is benefi cial for the prevention of cardiovascular disease: an umbrella review of meta-analyses. J. Chiropr. Med. 2017;16:289–299. DOI: 10.1016/j.jcm.2017.05.005</mixed-citation><mixed-citation xml:lang="en">McRae M.P. Dietary fi ber is benefi cial for the prevention of cardiovascular disease: an umbrella review of meta-analyses. J. Chiropr. Med. 2017;16:289–299. DOI: 10.1016/j.jcm.2017.05.005</mixed-citation></citation-alternatives></ref><ref id="cit17"><label>17</label><citation-alternatives><mixed-citation xml:lang="ru">Akshintala V.S., Talukdar R., Singh V.K., Goggins M. The gut microbiome in pancreatic disease. Clin. Gastroenterol. Hepatol. 2018;17:290–295. DOI: 10.1016/j.cgh.2018.08.045</mixed-citation><mixed-citation xml:lang="en">Akshintala V.S., Talukdar R., Singh V.K., Goggins M. The gut microbiome in pancreatic disease. Clin. Gastroenterol. Hepatol. 2018;17:290–295. DOI: 10.1016/j.cgh.2018.08.045</mixed-citation></citation-alternatives></ref><ref id="cit18"><label>18</label><citation-alternatives><mixed-citation xml:lang="ru">Diamanti A.P., Rosado M.M., Laganà B., D’Amelio R. Microbiota and chronic infl ammatory arthritis: An interwoven link. J. Transl. Med. 2016;14:233. DOI: 10.1186/s12967-016-0989-3</mixed-citation><mixed-citation xml:lang="en">Diamanti A.P., Rosado M.M., Laganà B., D’Amelio R. Microbiota and chronic infl ammatory arthritis: An interwoven link. J. Transl. Med. 2016;14:233. DOI: 10.1186/s12967-016-0989-3</mixed-citation></citation-alternatives></ref><ref id="cit19"><label>19</label><citation-alternatives><mixed-citation xml:lang="ru">Kang L., Li P., Wang D., Wang T., Hao D., Qu X. Alterations in intestinal microbiota diversity, composition, and function in patients with sarcopenia. Nature. 2021;11:4628. DOI: 10.1038/s41598-021-84031-0</mixed-citation><mixed-citation xml:lang="en">Kang L., Li P., Wang D., Wang T., Hao D., Qu X. Alterations in intestinal microbiota diversity, composition, and function in patients with sarcopenia. Nature. 2021;11:4628. DOI: 10.1038/s41598-021-84031-0</mixed-citation></citation-alternatives></ref><ref id="cit20"><label>20</label><citation-alternatives><mixed-citation xml:lang="ru">Gentile F., Doneddu P.E., Riva N., Nobile-Orazio E., Quattrini A. Diet, microbiota and brain health: unraveling the network intersecting metabolism and neurodegeneration. Int. J. Mol. Sci. 2020;21:7471. DOI: 10.3390/ijms21207471</mixed-citation><mixed-citation xml:lang="en">Gentile F., Doneddu P.E., Riva N., Nobile-Orazio E., Quattrini A. Diet, microbiota and brain health: unraveling the network intersecting metabolism and neurodegeneration. Int. J. Mol. Sci. 2020;21:7471. DOI: 10.3390/ijms21207471</mixed-citation></citation-alternatives></ref><ref id="cit21"><label>21</label><citation-alternatives><mixed-citation xml:lang="ru">Friedland R.P. Mechanisms of molecular mimicry involving the microbiota in neurodegeneration. J. Alzheimer’s Dis. 2015;45:349–352. DOI: 10.3233/JAD-142841</mixed-citation><mixed-citation xml:lang="en">Friedland R.P. Mechanisms of molecular mimicry involving the microbiota in neurodegeneration. J. Alzheimer’s Dis. 2015;45:349–352. DOI: 10.3233/JAD-142841</mixed-citation></citation-alternatives></ref><ref id="cit22"><label>22</label><citation-alternatives><mixed-citation xml:lang="ru">Baldini F., Hertel J., Sandt E., Thinnes C.C., Neuberger-Castillo L., Pavelka L. et al. Parkinson’s disease-associated alterations of the gut microbiome predict disease relevant changes in metabolic functions. BMC Biol. 2020;18:62. DOI: 10.1186/s12915-020-00775-7</mixed-citation><mixed-citation xml:lang="en">Baldini F., Hertel J., Sandt E., Thinnes C.C., Neuberger-Castillo L., Pavelka L. et al. Parkinson’s disease-associated alterations of the gut microbiome predict disease relevant changes in metabolic functions. BMC Biol. 2020;18:62. DOI: 10.1186/s12915-020-00775-7</mixed-citation></citation-alternatives></ref><ref id="cit23"><label>23</label><citation-alternatives><mixed-citation xml:lang="ru">Goyal D., Ali S.A., Singh R.K. Emerging role of gut microbiota in modulation of neuroinfl ammation and neurodegeneration with emphasis on Alzheimer’s disease. Prog. Neuropsychopharmacol. Biol. Psychiatry. 2021;106:9. DOI: 10.1016/j.pnpbp.2020.110112</mixed-citation><mixed-citation xml:lang="en">Goyal D., Ali S.A., Singh R.K. Emerging role of gut microbiota in modulation of neuroinfl ammation and neurodegeneration with emphasis on Alzheimer’s disease. Prog. Neuropsychopharmacol. Biol. Psychiatry. 2021;106:9. DOI: 10.1016/j.pnpbp.2020.110112</mixed-citation></citation-alternatives></ref><ref id="cit24"><label>24</label><citation-alternatives><mixed-citation xml:lang="ru">Lazar V., Ditu L.-M., Pircalabioru G.G., Gheorghe I., Curutiu C., Holban A.M. et al. Aspects of gut microbiota and immune system interactions in infectious diseases, immunopathology, and cancer. Front. Immunol. 2018;9:1830. DOI: 10.3389/fimmu.2018.01830</mixed-citation><mixed-citation xml:lang="en">Lazar V., Ditu L.-M., Pircalabioru G.G., Gheorghe I., Curutiu C., Holban A.M. et al. Aspects of gut microbiota and immune system interactions in infectious diseases, immunopathology, and cancer. Front. Immunol. 2018;9:1830. DOI: 10.3389/fimmu.2018.01830</mixed-citation></citation-alternatives></ref><ref id="cit25"><label>25</label><citation-alternatives><mixed-citation xml:lang="ru">Hotamisligil G.S. Infl ammation, metafl ammation and immunometabolic disorders. Nature. 2017;542:177–185. DOI: 10.1038/nature21363</mixed-citation><mixed-citation xml:lang="en">Hotamisligil G.S. Infl ammation, metafl ammation and immunometabolic disorders. Nature. 2017;542:177–185. DOI: 10.1038/nature21363</mixed-citation></citation-alternatives></ref><ref id="cit26"><label>26</label><citation-alternatives><mixed-citation xml:lang="ru">Menzel A., Samouda H., Dohet F., Loap S., Ellulu M.S., Bohn T. Common and novel markers for measuring infl ammation and oxidative stress ex vivo in research and clinical practice — which to use regarding disease outcomes? Antioxidants. 2021;10:414. DOI: 10.3390/antiox10030414</mixed-citation><mixed-citation xml:lang="en">Menzel A., Samouda H., Dohet F., Loap S., Ellulu M.S., Bohn T. Common and novel markers for measuring infl ammation and oxidative stress ex vivo in research and clinical practice — which to use regarding disease outcomes? Antioxidants. 2021;10:414. DOI: 10.3390/antiox10030414</mixed-citation></citation-alternatives></ref><ref id="cit27"><label>27</label><citation-alternatives><mixed-citation xml:lang="ru">Vijay A., Valdes A.M. Role of the gut microbiome in chronic diseases: a narrative review. Eur. J. Clin. Nutr. 2022;76:489–501.DOI: 10.1038/s41430-021-00991-6</mixed-citation><mixed-citation xml:lang="en">Vijay A., Valdes A.M. Role of the gut microbiome in chronic diseases: a narrative review. Eur. J. Clin. Nutr. 2022;76:489–501.DOI: 10.1038/s41430-021-00991-6</mixed-citation></citation-alternatives></ref><ref id="cit28"><label>28</label><citation-alternatives><mixed-citation xml:lang="ru">Ghosh T.S., Shanahan F. &amp; O’Toole P.W. The gut microbiome as a modulator of healthy ageing. Nat. Rev. Gastroenterol. Hepatol. 2022;19:565–584. DOI: 10.1038/s41575-022-00605-x</mixed-citation><mixed-citation xml:lang="en">Ghosh T.S., Shanahan F. &amp; O’Toole P.W. The gut microbiome as a modulator of healthy ageing. Nat. Rev. Gastroenterol. Hepatol. 2022;19:565–584. DOI: 10.1038/s41575-022-00605-x</mixed-citation></citation-alternatives></ref><ref id="cit29"><label>29</label><citation-alternatives><mixed-citation xml:lang="ru">Hasavci D., Blank T. Age-dependent eff ects of gut microbiota metabolites on brain resident macrophages. Front Cell Neurosci. 2022;16:944526. DOI: 10.3389/fncel.2022.944526</mixed-citation><mixed-citation xml:lang="en">Hasavci D., Blank T. Age-dependent eff ects of gut microbiota metabolites on brain resident macrophages. Front Cell Neurosci. 2022;16:944526. DOI: 10.3389/fncel.2022.944526</mixed-citation></citation-alternatives></ref><ref id="cit30"><label>30</label><citation-alternatives><mixed-citation xml:lang="ru">An R., Wilms E., Masclee A.A.M. et al. Age-dependent changes in GI physiology and microbiota: time to reconsider? Gut. 2018;67:2213 – 2222.</mixed-citation><mixed-citation xml:lang="en">An R., Wilms E., Masclee A.A.M. et al. Age-dependent changes in GI physiology and microbiota: time to reconsider? Gut. 2018;67:2213 – 2222.</mixed-citation></citation-alternatives></ref><ref id="cit31"><label>31</label><citation-alternatives><mixed-citation xml:lang="ru">Simões C.D., Maganinho M., Sousa A.S. FODMAPs, infl ammatory bowel disease and gut microbiota: Updated overview on the current evidence. Eur. J. Nutr. 2022;61:1187–1198. DOI: 10.1007/s00394-021-02755-1</mixed-citation><mixed-citation xml:lang="en">Simões C.D., Maganinho M., Sousa A.S. FODMAPs, infl ammatory bowel disease and gut microbiota: Updated overview on the current evidence. Eur. J. Nutr. 2022;61:1187–1198. DOI: 10.1007/s00394-021-02755-1</mixed-citation></citation-alternatives></ref><ref id="cit32"><label>32</label><citation-alternatives><mixed-citation xml:lang="ru">Santacroce L., Man A., Charitos I.A., Haxhirexha K., Topi S. Current knowledge about the connection between health status and gut microbiota from birth to elderly. A narrative review. Front. Biosci. 2021;26:135–148. DOI: 10.52586/4930</mixed-citation><mixed-citation xml:lang="en">Santacroce L., Man A., Charitos I.A., Haxhirexha K., Topi S. Current knowledge about the connection between health status and gut microbiota from birth to elderly. A narrative review. Front. Biosci. 2021;26:135–148. DOI: 10.52586/4930</mixed-citation></citation-alternatives></ref><ref id="cit33"><label>33</label><citation-alternatives><mixed-citation xml:lang="ru">Rowland I., Gibson G., Heinken A., Scott K., Swann J., Thiele I., et al. Gut microbiota functions: Metabolism of nutrients and other food components. Eur. J. Nutr. 2018;57:1–24. DOI: 10.1007/s00394-017-1445-8</mixed-citation><mixed-citation xml:lang="en">Rowland I., Gibson G., Heinken A., Scott K., Swann J., Thiele I., et al. Gut microbiota functions: Metabolism of nutrients and other food components. Eur. J. Nutr. 2018;57:1–24. DOI: 10.1007/s00394-017-1445-8</mixed-citation></citation-alternatives></ref><ref id="cit34"><label>34</label><citation-alternatives><mixed-citation xml:lang="ru">Fava F., Rizzetto L., Tuohy K. Gut microbiota and health: Connecting actors across the metabolic system. Proc. Nutr. Soc. 2019;78:177– 188. DOI: 10.1017/S0029665118002719</mixed-citation><mixed-citation xml:lang="en">Fava F., Rizzetto L., Tuohy K. Gut microbiota and health: Connecting actors across the metabolic system. Proc. Nutr. Soc. 2019;78:177– 188. DOI: 10.1017/S0029665118002719</mixed-citation></citation-alternatives></ref><ref id="cit35"><label>35</label><citation-alternatives><mixed-citation xml:lang="ru">Ribaldone D.G., Pellicano R., Fagoonee S., Actis G.C. Modulation of the gut microbiota: Opportunities and regulatory aspects. Minerva Gastroenterol. 2022. DOI: 10.23736/S2724-5985.22.03152-7</mixed-citation><mixed-citation xml:lang="en">Ribaldone D.G., Pellicano R., Fagoonee S., Actis G.C. Modulation of the gut microbiota: Opportunities and regulatory aspects. Minerva Gastroenterol. 2022. DOI: 10.23736/S2724-5985.22.03152-7</mixed-citation></citation-alternatives></ref><ref id="cit36"><label>36</label><citation-alternatives><mixed-citation xml:lang="ru">Afzaal M., Saeed F., Shah Y.A., Hussain M., Rabail R., Socol C.T. et al. Human gut microbiota in health and disease: Unveiling the relationship. Front Microbiol. 2022;13:999001. DOI: 10.3389/fmicb.2022.999001</mixed-citation><mixed-citation xml:lang="en">Afzaal M., Saeed F., Shah Y.A., Hussain M., Rabail R., Socol C.T. et al. Human gut microbiota in health and disease: Unveiling the relationship. Front Microbiol. 2022;13:999001. DOI: 10.3389/fmicb.2022.999001</mixed-citation></citation-alternatives></ref><ref id="cit37"><label>37</label><citation-alternatives><mixed-citation xml:lang="ru">Von Martels J.Z., Sadabad M.S., Bourgonje A.R. et al. The role of gut microbiota in health and disease: In vitro modeling of host-microbe interactions at the aerobe-anaerobe interphase of the human gut. Anaerobe. 2017;44:3–12. DOI: 10.1016/j.anaerobe.2017.01.001</mixed-citation><mixed-citation xml:lang="en">Von Martels J.Z., Sadabad M.S., Bourgonje A.R. et al. The role of gut microbiota in health and disease: In vitro modeling of host-microbe interactions at the aerobe-anaerobe interphase of the human gut. Anaerobe. 2017;44:3–12. DOI: 10.1016/j.anaerobe.2017.01.001</mixed-citation></citation-alternatives></ref><ref id="cit38"><label>38</label><citation-alternatives><mixed-citation xml:lang="ru">Kho Z.Y., Lal S.K. The human gut microbiome — a potential controller of wellness and disease. Front. Microbiol. 2018;9:1835. DOI: 10.3389/fmicb.2018.01835</mixed-citation><mixed-citation xml:lang="en">Kho Z.Y., Lal S.K. The human gut microbiome — a potential controller of wellness and disease. Front. Microbiol. 2018;9:1835. DOI: 10.3389/fmicb.2018.01835</mixed-citation></citation-alternatives></ref><ref id="cit39"><label>39</label><citation-alternatives><mixed-citation xml:lang="ru">Szablewski L. Human gut microbiota in health and Alzheimer’s disease. J. Alzheimers Dis. 2018;62:549–560. DOI: 10.3233/JAD170908</mixed-citation><mixed-citation xml:lang="en">Szablewski L. Human gut microbiota in health and Alzheimer’s disease. J. Alzheimers Dis. 2018;62:549–560. DOI: 10.3233/JAD170908</mixed-citation></citation-alternatives></ref><ref id="cit40"><label>40</label><citation-alternatives><mixed-citation xml:lang="ru">Cani P.D., Van Hul M. Do diet and microbes really ‘PREDICT’ cardiometabolic risks? Nat. Rev. Endocrinol. 2021;17:259–60. DOI: 10.1038/s41574-021-00480-7</mixed-citation><mixed-citation xml:lang="en">Cani P.D., Van Hul M. Do diet and microbes really ‘PREDICT’ cardiometabolic risks? Nat. Rev. Endocrinol. 2021;17:259–60. DOI: 10.1038/s41574-021-00480-7</mixed-citation></citation-alternatives></ref><ref id="cit41"><label>41</label><citation-alternatives><mixed-citation xml:lang="ru">Cani P.D., Moens de Hase E., Van Hul M. Gut microbiota and host metabolism: from proof of concept to therapeutic intervention. Microorganisms. 2021;9:1302. DOI: 10.3390/microorganisms9061302</mixed-citation><mixed-citation xml:lang="en">Cani P.D., Moens de Hase E., Van Hul M. Gut microbiota and host metabolism: from proof of concept to therapeutic intervention. Microorganisms. 2021;9:1302. DOI: 10.3390/microorganisms9061302</mixed-citation></citation-alternatives></ref><ref id="cit42"><label>42</label><citation-alternatives><mixed-citation xml:lang="ru">Cani P.D., Van Hul M.. Mediterranean diet, gut microbiota and health: when age and calories do not add up! Gut. 2020;69:1167–8. DOI: 10.1136/gutjnl-2020-320781</mixed-citation><mixed-citation xml:lang="en">Cani P.D., Van Hul M.. Mediterranean diet, gut microbiota and health: when age and calories do not add up! Gut. 2020;69:1167–8. DOI: 10.1136/gutjnl-2020-320781</mixed-citation></citation-alternatives></ref><ref id="cit43"><label>43</label><citation-alternatives><mixed-citation xml:lang="ru">Rauf A., Khalil A.A., Rahman U.U. et al. Recent advances in the therapeutic application of short-chain fatty acids (SCFAs): An updated review. Crit. Rev. Food Sci. Nutr. 2022;62:6034–6054.</mixed-citation><mixed-citation xml:lang="en">Rauf A., Khalil A.A., Rahman U.U. et al. Recent advances in the therapeutic application of short-chain fatty acids (SCFAs): An updated review. Crit. Rev. Food Sci. Nutr. 2022;62:6034–6054.</mixed-citation></citation-alternatives></ref><ref id="cit44"><label>44</label><citation-alternatives><mixed-citation xml:lang="ru">Wang M., Wichienchot S., He X., Fu X., Huang Q., Zhang B. In vitro colonic fermentation of dietary fi bers: Fermentation rate, short-chain fatty acid production and changes in microbiota. Trends Food Sci. Technol. 2019;88:1–9. DOI: 10.1016/j.tifs.2019.03.005</mixed-citation><mixed-citation xml:lang="en">Wang M., Wichienchot S., He X., Fu X., Huang Q., Zhang B. In vitro colonic fermentation of dietary fi bers: Fermentation rate, short-chain fatty acid production and changes in microbiota. Trends Food Sci. Technol. 2019;88:1–9. DOI: 10.1016/j.tifs.2019.03.005</mixed-citation></citation-alternatives></ref><ref id="cit45"><label>45</label><citation-alternatives><mixed-citation xml:lang="ru">Havenaar R. Intestinal health functions of colonic microbial metabolites: A review. Benef. Microbes 2011;2:103–114. DOI: 10.3920/BM2011.0003</mixed-citation><mixed-citation xml:lang="en">Havenaar R. Intestinal health functions of colonic microbial metabolites: A review. Benef. Microbes 2011;2:103–114. DOI: 10.3920/BM2011.0003</mixed-citation></citation-alternatives></ref><ref id="cit46"><label>46</label><citation-alternatives><mixed-citation xml:lang="ru">Steliou K., Boosalis M.S., Perrine S.P., Sangerman J., Faller D.V. Butyrate histone deacetylase inhibitors. Biores. Open Access. 2012;1:192–198. DOI: 10.1089/biores.2012.0223</mixed-citation><mixed-citation xml:lang="en">Steliou K., Boosalis M.S., Perrine S.P., Sangerman J., Faller D.V. Butyrate histone deacetylase inhibitors. Biores. Open Access. 2012;1:192–198. DOI: 10.1089/biores.2012.0223</mixed-citation></citation-alternatives></ref><ref id="cit47"><label>47</label><citation-alternatives><mixed-citation xml:lang="ru">Cani P.D. Human gut microbiome: Hopes, threats and promises. Gut. 2018;67:1716–1725. DOI: 10.1136/gutjnl-2018-316723</mixed-citation><mixed-citation xml:lang="en">Cani P.D. Human gut microbiome: Hopes, threats and promises. Gut. 2018;67:1716–1725. DOI: 10.1136/gutjnl-2018-316723</mixed-citation></citation-alternatives></ref><ref id="cit48"><label>48</label><citation-alternatives><mixed-citation xml:lang="ru">Zi-Han Geng, Yan Zhu, Quan-Lin Li, Chao Zhao, Ping-Hong Zhou. Enteric Nervous System: the brigde between the gut microbiota and neurological disorders. Front Aging Neurosci. 2022;14:810483. DOI: 10.3389/fnagi.2022.810483</mixed-citation><mixed-citation xml:lang="en">Zi-Han Geng, Yan Zhu, Quan-Lin Li, Chao Zhao, Ping-Hong Zhou. Enteric Nervous System: the brigde between the gut microbiota and neurological disorders. Front Aging Neurosci. 2022;14:810483. DOI: 10.3389/fnagi.2022.810483</mixed-citation></citation-alternatives></ref><ref id="cit49"><label>49</label><citation-alternatives><mixed-citation xml:lang="ru">Arany Z., Neinast, M. Branched chain amino acids in metabolic disease. Curr. Diab. Rep. 2018;18(10):76. DOI: 10.1007/s11892-018-1048-7</mixed-citation><mixed-citation xml:lang="en">Arany Z., Neinast, M. Branched chain amino acids in metabolic disease. Curr. Diab. Rep. 2018;18(10):76. DOI: 10.1007/s11892-018-1048-7</mixed-citation></citation-alternatives></ref><ref id="cit50"><label>50</label><citation-alternatives><mixed-citation xml:lang="ru">Matsumura A., Ghosh A., Pope G.S., Darbre P.D. Comparative study of oestrogenic properties of eight phytoestrogens in MCF7 human breast cancer cells. J. Steroid Biochem. Mol. Biol. 2005;94(5):431– 443. DOI: 10.1016/j.jsbmb.2004.12.041</mixed-citation><mixed-citation xml:lang="en">Matsumura A., Ghosh A., Pope G.S., Darbre P.D. Comparative study of oestrogenic properties of eight phytoestrogens in MCF7 human breast cancer cells. J. Steroid Biochem. Mol. Biol. 2005;94(5):431– 443. DOI: 10.1016/j.jsbmb.2004.12.041</mixed-citation></citation-alternatives></ref><ref id="cit51"><label>51</label><citation-alternatives><mixed-citation xml:lang="ru">Ramírez-Macías I., Orenes-Piñero E., Camelo-Castillo A., Rivera-Caravaca J.M., López-García C., Marín F. Novel insights in the relationship of gut microbiota and coronary artery diseases. Crit. Rev. Food Sci. Nutr. 2022;62:3738–3750. DOI: 10.1080/10408398.2020.1868397</mixed-citation><mixed-citation xml:lang="en">Ramírez-Macías I., Orenes-Piñero E., Camelo-Castillo A., Rivera-Caravaca J.M., López-García C., Marín F. Novel insights in the relationship of gut microbiota and coronary artery diseases. Crit. Rev. Food Sci. Nutr. 2022;62:3738–3750. DOI: 10.1080/10408398.2020.1868397</mixed-citation></citation-alternatives></ref><ref id="cit52"><label>52</label><citation-alternatives><mixed-citation xml:lang="ru">Psichas A., Sleeth M.L., Murphy K.G. et al. The short chain fatty acid propionate stimulates GLP-1 and PYY secretion via free fatty acid receptor 2 in rodents. Int. J. Obes. 2015;39:424–429. DOI: 10.1038/ijo.2014.153</mixed-citation><mixed-citation xml:lang="en">Psichas A., Sleeth M.L., Murphy K.G. et al. The short chain fatty acid propionate stimulates GLP-1 and PYY secretion via free fatty acid receptor 2 in rodents. Int. J. Obes. 2015;39:424–429. DOI: 10.1038/ijo.2014.153</mixed-citation></citation-alternatives></ref><ref id="cit53"><label>53</label><citation-alternatives><mixed-citation xml:lang="ru">Larraufi e P., Martin-Gallausiaux C., Lapaque N. et al. SCFAs strongly stimulate PYY production in human enteroendocrine cells. Sci. Rep. 2018;8:74. DOI: 10.1038/s41598-017-18259-0</mixed-citation><mixed-citation xml:lang="en">Larraufi e P., Martin-Gallausiaux C., Lapaque N. et al. SCFAs strongly stimulate PYY production in human enteroendocrine cells. Sci. Rep. 2018;8:74. DOI: 10.1038/s41598-017-18259-0</mixed-citation></citation-alternatives></ref><ref id="cit54"><label>54</label><citation-alternatives><mixed-citation xml:lang="ru">Mischke M., Plösch T. The gut microbiota and their metabolites: Potential implications for the host epigenome. Microb. Hum. Body. 2016;902:33–44. DOI: 10.1007/978-3-319-31248-4_3</mixed-citation><mixed-citation xml:lang="en">Mischke M., Plösch T. The gut microbiota and their metabolites: Potential implications for the host epigenome. Microb. Hum. Body. 2016;902:33–44. DOI: 10.1007/978-3-319-31248-4_3</mixed-citation></citation-alternatives></ref><ref id="cit55"><label>55</label><citation-alternatives><mixed-citation xml:lang="ru">Hendrikx T., Schnabl B. Indoles: Metabolites produced by intestinal bacteria capable of controlling liver disease manifestation. J. Intern. Med. 2019;286:32–40. DOI: 10.1111/joim.12892</mixed-citation><mixed-citation xml:lang="en">Hendrikx T., Schnabl B. Indoles: Metabolites produced by intestinal bacteria capable of controlling liver disease manifestation. J. Intern. Med. 2019;286:32–40. DOI: 10.1111/joim.12892</mixed-citation></citation-alternatives></ref><ref id="cit56"><label>56</label><citation-alternatives><mixed-citation xml:lang="ru">Lightfoot Y.L., Yang T., Sahay B., Mohamadzadeh M. Targeting aberrant colon cancer-specifi c DNA methylation with lipoteichoic acid-defi cient Lactobacillus acidophilus. Gut. Microbes. 2013;4:84– 88. DOI: 10.4161/gmic.22822</mixed-citation><mixed-citation xml:lang="en">Lightfoot Y.L., Yang T., Sahay B., Mohamadzadeh M. Targeting aberrant colon cancer-specifi c DNA methylation with lipoteichoic acid-defi cient Lactobacillus acidophilus. Gut. Microbes. 2013;4:84– 88. DOI: 10.4161/gmic.22822</mixed-citation></citation-alternatives></ref><ref id="cit57"><label>57</label><citation-alternatives><mixed-citation xml:lang="ru">Larrosa M., González-Sarrías A., Yáñez-Gascón M.J. et al. Anti-infl ammatory properties of a pomegranate extract and its metabolite urolithin — A in a colitis rat model and the eff ect of colon infl ammation on phenolic metabolism. J. Nutr. Biochem. 2010;21:717–725. DOI: 10.1016/j.jnutbio.2009.04.012</mixed-citation><mixed-citation xml:lang="en">Larrosa M., González-Sarrías A., Yáñez-Gascón M.J. et al. Anti-infl ammatory properties of a pomegranate extract and its metabolite urolithin — A in a colitis rat model and the eff ect of colon infl ammation on phenolic metabolism. J. Nutr. Biochem. 2010;21:717–725. DOI: 10.1016/j.jnutbio.2009.04.012</mixed-citation></citation-alternatives></ref><ref id="cit58"><label>58</label><citation-alternatives><mixed-citation xml:lang="ru">Smallwood T., Allayee H., Bennett B.J. Choline metabolites: Gene by diet interactions. Curr. Opin. Lipidol. 2016;27:33. DOI: 10.1097/ MOL.0000000000000259</mixed-citation><mixed-citation xml:lang="en">Smallwood T., Allayee H., Bennett B.J. Choline metabolites: Gene by diet interactions. Curr. Opin. Lipidol. 2016;27:33. DOI: 10.1097/ MOL.0000000000000259</mixed-citation></citation-alternatives></ref><ref id="cit59"><label>59</label><citation-alternatives><mixed-citation xml:lang="ru">Rooks M.G., Garrett W.S. Gut microbiota, metabolites and host immunity. Nat. Rev. Immunol. 2016;16:341–352. DOI: 10.1038/nri.2016.42</mixed-citation><mixed-citation xml:lang="en">Rooks M.G., Garrett W.S. Gut microbiota, metabolites and host immunity. Nat. Rev. Immunol. 2016;16:341–352. DOI: 10.1038/nri.2016.42</mixed-citation></citation-alternatives></ref><ref id="cit60"><label>60</label><citation-alternatives><mixed-citation xml:lang="ru">Tofalo R., Cocchi S., Suzzi G. Polyamines and gut microbiota. Front. Nutr. 2019;6:16. DOI: 10.3389/fnut.2019.00016</mixed-citation><mixed-citation xml:lang="en">Tofalo R., Cocchi S., Suzzi G. Polyamines and gut microbiota. Front. Nutr. 2019;6:16. DOI: 10.3389/fnut.2019.00016</mixed-citation></citation-alternatives></ref><ref id="cit61"><label>61</label><citation-alternatives><mixed-citation xml:lang="ru">Nicholson J.K., Holmes E., Kinross J., Burcelin R., Gibson G., Jia W. Host-gut microbiota metabolic interactions. Science. 2012;336:1262– 1267. DOI: 10.1126/science.1223813</mixed-citation><mixed-citation xml:lang="en">Nicholson J.K., Holmes E., Kinross J., Burcelin R., Gibson G., Jia W. Host-gut microbiota metabolic interactions. Science. 2012;336:1262– 1267. DOI: 10.1126/science.1223813</mixed-citation></citation-alternatives></ref><ref id="cit62"><label>62</label><citation-alternatives><mixed-citation xml:lang="ru">Forster V.J., McDonnell A., Theobald R., McKay J.A. Eff ect of methotrexate/vitamin B12 on DNA methylation as a potential factor in leukemia treatment-related neurotoxicity. Epigenomics. 2017;9:1205–1218. DOI: 10.2217/epi-2016-0165</mixed-citation><mixed-citation xml:lang="en">Forster V.J., McDonnell A., Theobald R., McKay J.A. Eff ect of methotrexate/vitamin B12 on DNA methylation as a potential factor in leukemia treatment-related neurotoxicity. Epigenomics. 2017;9:1205–1218. DOI: 10.2217/epi-2016-0165</mixed-citation></citation-alternatives></ref><ref id="cit63"><label>63</label><citation-alternatives><mixed-citation xml:lang="ru">Yao C.K., Muir J.G., Gibson P.R. Insights into colonic protein fermentation, its modulation and potential health implications. Aliment. Pharmacol. Ther. 2016;43:181–196. DOI: 10.1111/apt.13456</mixed-citation><mixed-citation xml:lang="en">Yao C.K., Muir J.G., Gibson P.R. Insights into colonic protein fermentation, its modulation and potential health implications. Aliment. Pharmacol. Ther. 2016;43:181–196. DOI: 10.1111/apt.13456</mixed-citation></citation-alternatives></ref><ref id="cit64"><label>64</label><citation-alternatives><mixed-citation xml:lang="ru">Wu J., Wang K., Wang X., Pang Y., Jiang C. The role of the gut microbiome and its metabolites in metabolic diseases. Protein Cell. 2021;12:360–373. DOI: 10.1007/s13238-020-00814-7</mixed-citation><mixed-citation xml:lang="en">Wu J., Wang K., Wang X., Pang Y., Jiang C. The role of the gut microbiome and its metabolites in metabolic diseases. Protein Cell. 2021;12:360–373. DOI: 10.1007/s13238-020-00814-7</mixed-citation></citation-alternatives></ref><ref id="cit65"><label>65</label><citation-alternatives><mixed-citation xml:lang="ru">Pessa-Morikawa T. et al. Maternal microbiota-derived metabolic profi le in fetal murine intestine, brain and placenta. BMC Microbiol. 2022;22(1):46. DOI: 10.1186/s12866-022-02457-6</mixed-citation><mixed-citation xml:lang="en">Pessa-Morikawa T. et al. Maternal microbiota-derived metabolic profi le in fetal murine intestine, brain and placenta. BMC Microbiol. 2022;22(1):46. DOI: 10.1186/s12866-022-02457-6</mixed-citation></citation-alternatives></ref><ref id="cit66"><label>66</label><citation-alternatives><mixed-citation xml:lang="ru">Zierer J. et al. The fecal metabolome as a functional readout of the gut microbiome. Nat. Genet. 2018;50(6):790–795. DOI: 10.1038/s41588-018-0135-7</mixed-citation><mixed-citation xml:lang="en">Zierer J. et al. The fecal metabolome as a functional readout of the gut microbiome. Nat. Genet. 2018;50(6):790–795. DOI: 10.1038/s41588-018-0135-7</mixed-citation></citation-alternatives></ref><ref id="cit67"><label>67</label><citation-alternatives><mixed-citation xml:lang="ru">Zakharzhevskaya N. Lyamina S.V., Maev I.V. et al. НS-GC/MSbased metabolomics approach for volatile compounds analysis in IBD. United European Gastroenterology Journal. 2021;9(S8):471.</mixed-citation><mixed-citation xml:lang="en">Zakharzhevskaya N. Lyamina S.V., Maev I.V. et al. НS-GC/MSbased metabolomics approach for volatile compounds analysis in IBD. United European Gastroenterology Journal. 2021;9(S8):471.</mixed-citation></citation-alternatives></ref><ref id="cit68"><label>68</label><citation-alternatives><mixed-citation xml:lang="ru">Lyamina S., Maev I., Govorun V. Precision diagnostics in IBD: metabolomic and genetic profi ling. United European Gastroenterology Journal. 2021;9(S8):471–472.</mixed-citation><mixed-citation xml:lang="en">Lyamina S., Maev I., Govorun V. Precision diagnostics in IBD: metabolomic and genetic profi ling. United European Gastroenterology Journal. 2021;9(S8):471–472.</mixed-citation></citation-alternatives></ref><ref id="cit69"><label>69</label><citation-alternatives><mixed-citation xml:lang="ru">Lyamina S.V., Govorun V.M., Maev I.V. Metabolomic profi ling in IBD: early diff erential diagnostics in Crohn’s disease and ulcerative colitis patients. Gut. 2022;71(S2):A126.</mixed-citation><mixed-citation xml:lang="en">Lyamina S.V., Govorun V.M., Maev I.V. Metabolomic profi ling in IBD: early diff erential diagnostics in Crohn’s disease and ulcerative colitis patients. Gut. 2022;71(S2):A126.</mixed-citation></citation-alternatives></ref><ref id="cit70"><label>70</label><citation-alternatives><mixed-citation xml:lang="ru">Lyamina S., Maev I., Govorun V. Combined metabolomic and genomic profi ling as a screening non-invasive diagnostic method in Crohn’s disease patients. Gut. 2023;72(S1):A220.</mixed-citation><mixed-citation xml:lang="en">Lyamina S., Maev I., Govorun V. Combined metabolomic and genomic profi ling as a screening non-invasive diagnostic method in Crohn’s disease patients. Gut. 2023;72(S1):A220.</mixed-citation></citation-alternatives></ref><ref id="cit71"><label>71</label><citation-alternatives><mixed-citation xml:lang="ru">Sharon G. et al. Specialized metabolites from the microbiome in health and disease. Cell Metab. 2014;20(5):719–730. DOI:10.1016/j.cmet.2014.10.016</mixed-citation><mixed-citation xml:lang="en">Sharon G. et al. Specialized metabolites from the microbiome in health and disease. Cell Metab. 2014;20(5):719–730. DOI:10.1016/j.cmet.2014.10.016</mixed-citation></citation-alternatives></ref><ref id="cit72"><label>72</label><citation-alternatives><mixed-citation xml:lang="ru">Маев И.В., Говорун В.М., Лямина С.В. и др. Способ определения риска развития воспалительного заболевания кишечника по характеристике метаболитов. Официальный бюллетень Феде ральной службы по интеллектуальной собственности (Роспатент) №7; опубликовано 28.02.2023.</mixed-citation><mixed-citation xml:lang="en">Mayev I.V., Govorun V.M., Lyamina S.V. et al. A method for determining the risk of developing infl ammatory bowel disease based on the characteristics of metabolites. Offi cial Bulletin of the Federal Service for Intellectual Property (Rospatent) No.7; published 02/28/2023. (In Russian).</mixed-citation></citation-alternatives></ref><ref id="cit73"><label>73</label><citation-alternatives><mixed-citation xml:lang="ru">Маев И.В., Говорун В.М., Лямина С.В., Захаржевская Н.Б., Конанов Д.Н., Кардонский Д.А., Кривонос Д.В., Куприянова О.В., Маркелова М.И., Григорьева Т.В. Способ скрининговой неинвазивной диагностики болезни Крона методами метаболомно-геномного профилирования. Официальный бюллетень Федеральной службы по интеллектуальной собственности (Роспатент) №16; опубликовано 06.06.2023.</mixed-citation><mixed-citation xml:lang="en">Mayev I.V., Govorun V.M., Lyamina S.V., Zakharzhevskaya N.B., Konanov D.N., Kardonsky D.A., Krivonos D.V., Kupriyanova O.V., Markelova M.I., Grigorieva T.V. Method of screening noninvasive diagnosis of Crohn’s disease by methods of metabolomic-genomic profi ling. Offi cial Bulletin of the Federal Service for Intellectual Property (Rospatent) No. 16; published 06.06.2023. (In Russian).</mixed-citation></citation-alternatives></ref><ref id="cit74"><label>74</label><citation-alternatives><mixed-citation xml:lang="ru">Lazar V., Ditu L.M., Pircalabioru G.G. et al. Aspects of gut microbiota and immune system interactions in infectious diseases, immunopathology, and cancer. Front. Immunol. 2018;9:1830. DOI: 10.3389/fi mmu.2018.01830</mixed-citation><mixed-citation xml:lang="en">Lazar V., Ditu L.M., Pircalabioru G.G. et al. Aspects of gut microbiota and immune system interactions in infectious diseases, immunopathology, and cancer. Front. Immunol. 2018;9:1830. DOI: 10.3389/fi mmu.2018.01830</mixed-citation></citation-alternatives></ref><ref id="cit75"><label>75</label><citation-alternatives><mixed-citation xml:lang="ru">Elmassry M. M., Zayed A., Farag M.A. Gut homeostasis and microbiota under attack: Impact of the diff erent types of food contaminants on gut health. Crit. Rev. Food Sci. Nutr. 2020;62:738–763. DOI: 10.1080/10408398.2020.1828263</mixed-citation><mixed-citation xml:lang="en">Elmassry M. M., Zayed A., Farag M.A. Gut homeostasis and microbiota under attack: Impact of the diff erent types of food contaminants on gut health. Crit. Rev. Food Sci. Nutr. 2020;62:738–763. DOI: 10.1080/10408398.2020.1828263</mixed-citation></citation-alternatives></ref><ref id="cit76"><label>76</label><citation-alternatives><mixed-citation xml:lang="ru">Schluter J., Peled J.U., Taylor B. et al. The gut microbiota is associated with immune cell dynamics in humans. Nature. 2020;588:303– 307. DOI: 10.1038/s41586-020-2971-8</mixed-citation><mixed-citation xml:lang="en">Schluter J., Peled J.U., Taylor B. et al. The gut microbiota is associated with immune cell dynamics in humans. Nature. 2020;588:303– 307. DOI: 10.1038/s41586-020-2971-8</mixed-citation></citation-alternatives></ref><ref id="cit77"><label>77</label><citation-alternatives><mixed-citation xml:lang="ru">Francino M.P. Early development of the gut microbiota and immune health. Pathogens. 2014;3:769–790. DOI: 10.3390/pathogens3030769</mixed-citation><mixed-citation xml:lang="en">Francino M.P. Early development of the gut microbiota and immune health. Pathogens. 2014;3:769–790. DOI: 10.3390/pathogens3030769</mixed-citation></citation-alternatives></ref><ref id="cit78"><label>78</label><citation-alternatives><mixed-citation xml:lang="ru">Owaga E., Hsieh R.H., Mugendi B., Masuku S., Shih C.K., Chang J.S. Th17 cells as potential probiotic therapeutic targets in infl ammatory bowel diseases. Int. J. Mol. Sci. 2015;16:20841–20858. DOI: 10.3390/ijms160920841</mixed-citation><mixed-citation xml:lang="en">Owaga E., Hsieh R.H., Mugendi B., Masuku S., Shih C.K., Chang J.S. Th17 cells as potential probiotic therapeutic targets in infl ammatory bowel diseases. Int. J. Mol. Sci. 2015;16:20841–20858. DOI: 10.3390/ijms160920841</mixed-citation></citation-alternatives></ref><ref id="cit79"><label>79</label><citation-alternatives><mixed-citation xml:lang="ru">Tomkovich S., Jobin C. Microbiota and host immune responses: A love–hate relationship. Immunology. 2016;147:1–10. DOI: 10.1111/imm.12538</mixed-citation><mixed-citation xml:lang="en">Tomkovich S., Jobin C. Microbiota and host immune responses: A love–hate relationship. Immunology. 2016;147:1–10. DOI: 10.1111/imm.12538</mixed-citation></citation-alternatives></ref><ref id="cit80"><label>80</label><citation-alternatives><mixed-citation xml:lang="ru">Rossi M., Bot A. The Th17 cell population and the immune homeostasis of the gastrointestinal tract. Int. Rev. Immunol. 2013;32:471– 474.</mixed-citation><mixed-citation xml:lang="en">Rossi M., Bot A. The Th17 cell population and the immune homeostasis of the gastrointestinal tract. Int. Rev. Immunol. 2013;32:471– 474.</mixed-citation></citation-alternatives></ref><ref id="cit81"><label>81</label><citation-alternatives><mixed-citation xml:lang="ru">Pickard J.M., Zeng M.Y., Caruso R., Núñez G. Gut microbiota: Role in pathogen colonization, immune responses, and infl ammatory disease. Immunol. Rev. 2017;279:70–89. DOI: 10.1111/imr.12567</mixed-citation><mixed-citation xml:lang="en">Pickard J.M., Zeng M.Y., Caruso R., Núñez G. Gut microbiota: Role in pathogen colonization, immune responses, and infl ammatory disease. Immunol. Rev. 2017;279:70–89. DOI: 10.1111/imr.12567</mixed-citation></citation-alternatives></ref><ref id="cit82"><label>82</label><citation-alternatives><mixed-citation xml:lang="ru">Wu H.J., Wu E. The role of gut microbiota in immune homeostasis and autoimmunity. Gut Microbes. 2012;3:4–14. DOI: 10.4161/gmic.19320</mixed-citation><mixed-citation xml:lang="en">Wu H.J., Wu E. The role of gut microbiota in immune homeostasis and autoimmunity. Gut Microbes. 2012;3:4–14. DOI: 10.4161/gmic.19320</mixed-citation></citation-alternatives></ref><ref id="cit83"><label>83</label><citation-alternatives><mixed-citation xml:lang="ru">Andréasson K., Alrawi Z., Persson A., Jönsson G., Marsal J. Intestinal dysbiosis is common in systemic sclerosis and associated with gastrointestinal and extraintestinal features of disease. Arthrit. Res. Ther. 2016;18:278. DOI: 10.1186/s13075-016-1182-z</mixed-citation><mixed-citation xml:lang="en">Andréasson K., Alrawi Z., Persson A., Jönsson G., Marsal J. Intestinal dysbiosis is common in systemic sclerosis and associated with gastrointestinal and extraintestinal features of disease. Arthrit. Res. Ther. 2016;18:278. DOI: 10.1186/s13075-016-1182-z</mixed-citation></citation-alternatives></ref><ref id="cit84"><label>84</label><citation-alternatives><mixed-citation xml:lang="ru">Rinninella E., Raoul P., Cintoni M. et al. What is the healthy gut microbiota composition? A changing ecosystem across age, environment, diet, and diseases. Microorganisms. 2019;7:14. DOI: 10.3390/microorganisms7010014</mixed-citation><mixed-citation xml:lang="en">Rinninella E., Raoul P., Cintoni M. et al. What is the healthy gut microbiota composition? A changing ecosystem across age, environment, diet, and diseases. Microorganisms. 2019;7:14. DOI: 10.3390/microorganisms7010014</mixed-citation></citation-alternatives></ref><ref id="cit85"><label>85</label><citation-alternatives><mixed-citation xml:lang="ru">Qin J., Li Y., Cai Z. et al. A metagenome‐wide association study of gut microbiota in type 2 diabetes. Nature. 2012;490(7418):55–60. DOI: 10.1038/nature11450</mixed-citation><mixed-citation xml:lang="en">Qin J., Li Y., Cai Z. et al. A metagenome‐wide association study of gut microbiota in type 2 diabetes. Nature. 2012;490(7418):55–60. DOI: 10.1038/nature11450</mixed-citation></citation-alternatives></ref><ref id="cit86"><label>86</label><citation-alternatives><mixed-citation xml:lang="ru">The Integrative Human Microbiome Project. The integrative human microbiome project. Nature. 2019;569(7758):641–8. DOI: 10.1038/s41586-019-1238-8</mixed-citation><mixed-citation xml:lang="en">The Integrative Human Microbiome Project. The integrative human microbiome project. Nature. 2019;569(7758):641–8. DOI: 10.1038/s41586-019-1238-8</mixed-citation></citation-alternatives></ref><ref id="cit87"><label>87</label><citation-alternatives><mixed-citation xml:lang="ru">Leiva‐Gea I., Sanchez‐Alcoholado L., Martin‐Tejedor B. et al. Gut microbiota diff ers in composition and functionality between children with type 1 diabetes and MODY2 and healthy control subjects: a case‐control study. Diabetes Care. 2018;41(11):2385–2395. DOI: 10.2337/dc18-0253</mixed-citation><mixed-citation xml:lang="en">Leiva‐Gea I., Sanchez‐Alcoholado L., Martin‐Tejedor B. et al. Gut microbiota diff ers in composition and functionality between children with type 1 diabetes and MODY2 and healthy control subjects: a case‐control study. Diabetes Care. 2018;41(11):2385–2395. DOI: 10.2337/dc18-0253</mixed-citation></citation-alternatives></ref><ref id="cit88"><label>88</label><citation-alternatives><mixed-citation xml:lang="ru">Zackular J.P., Rogers M.A.M., MTt R., Schloss P.D. The human gut microbiome as a screening tool for colorectal cancer. Cancer Prev. Res. (Phila). 2014;7(11):1112–21. DOI: 10.1158/1940-6207. CAPR-14-0129</mixed-citation><mixed-citation xml:lang="en">Zackular J.P., Rogers M.A.M., MTt R., Schloss P.D. The human gut microbiome as a screening tool for colorectal cancer. Cancer Prev. Res. (Phila). 2014;7(11):1112–21. DOI: 10.1158/1940-6207. CAPR-14-0129</mixed-citation></citation-alternatives></ref><ref id="cit89"><label>89</label><citation-alternatives><mixed-citation xml:lang="ru">Qin N., Yang F., Li A. et al. Alterations of the human gut microbiome in liver cirrhosis. Nature. 2014;513(7516):59–64. DOI: 10.1038/nature13568</mixed-citation><mixed-citation xml:lang="en">Qin N., Yang F., Li A. et al. Alterations of the human gut microbiome in liver cirrhosis. Nature. 2014;513(7516):59–64. DOI: 10.1038/nature13568</mixed-citation></citation-alternatives></ref><ref id="cit90"><label>90</label><citation-alternatives><mixed-citation xml:lang="ru">Ren Z., Li A., Jiang J. et al. Gut microbiome analysis as a tool towards targeted non‐invasive biomarkers for early hepatocellular carcinoma. Gut. 2019;68(6):1014–23. DOI: 10.1136/gutjnl-2017-315084</mixed-citation><mixed-citation xml:lang="en">Ren Z., Li A., Jiang J. et al. Gut microbiome analysis as a tool towards targeted non‐invasive biomarkers for early hepatocellular carcinoma. Gut. 2019;68(6):1014–23. DOI: 10.1136/gutjnl-2017-315084</mixed-citation></citation-alternatives></ref><ref id="cit91"><label>91</label><citation-alternatives><mixed-citation xml:lang="ru">Zimmermann P., Curtis N. The infl uence of the intestinal microbiome on vaccine responses. Vaccine. 2018;36(30):4433–9. DOI: 10.1016/j.vaccine.2018.04.066</mixed-citation><mixed-citation xml:lang="en">Zimmermann P., Curtis N. The infl uence of the intestinal microbiome on vaccine responses. Vaccine. 2018;36(30):4433–9. DOI: 10.1016/j.vaccine.2018.04.066</mixed-citation></citation-alternatives></ref><ref id="cit92"><label>92</label><citation-alternatives><mixed-citation xml:lang="ru">Zimmermann P., Messina N., Mohn W.W., Finlay B.B., Curtis N. Association between the intestinal microbiota and allergic sensitization, eczema, and asthma: a systematic review. J. Allergy Clin. Immunol. 2019;143(2):467–85.</mixed-citation><mixed-citation xml:lang="en">Zimmermann P., Messina N., Mohn W.W., Finlay B.B., Curtis N. Association between the intestinal microbiota and allergic sensitization, eczema, and asthma: a systematic review. J. Allergy Clin. Immunol. 2019;143(2):467–85.</mixed-citation></citation-alternatives></ref><ref id="cit93"><label>93</label><citation-alternatives><mixed-citation xml:lang="ru">Mego M., Chovanec J., Vochyanova‐Andrezalova I. et al. Prevention of irinotecan induced diarrhea by probiotics: a randomized double blind, placebo controlled pilot study. Complement. Ther. Med. 2015;23(3):356–62.</mixed-citation><mixed-citation xml:lang="en">Mego M., Chovanec J., Vochyanova‐Andrezalova I. et al. Prevention of irinotecan induced diarrhea by probiotics: a randomized double blind, placebo controlled pilot study. Complement. Ther. Med. 2015;23(3):356–62.</mixed-citation></citation-alternatives></ref><ref id="cit94"><label>94</label><citation-alternatives><mixed-citation xml:lang="ru">Lee J.R., Muthukumar T., Dadhania D. et al. Gut microbiota and tacrolimus dosing in kidney transplantation. PLoS One. 2015;10(3):e0122399.</mixed-citation><mixed-citation xml:lang="en">Lee J.R., Muthukumar T., Dadhania D. et al. Gut microbiota and tacrolimus dosing in kidney transplantation. PLoS One. 2015;10(3):e0122399.</mixed-citation></citation-alternatives></ref><ref id="cit95"><label>95</label><citation-alternatives><mixed-citation xml:lang="ru">Gopalakrishnan V., Spencer C.N., Nezi L. et al. Gut microbiome modulates response to anti‐PD‐1 immunotherapy in melanoma patients. Science. 2018;359(6371):97–103. DOI:10.1126/science.aan4236</mixed-citation><mixed-citation xml:lang="en">Gopalakrishnan V., Spencer C.N., Nezi L. et al. Gut microbiome modulates response to anti‐PD‐1 immunotherapy in melanoma patients. Science. 2018;359(6371):97–103. DOI:10.1126/science.aan4236</mixed-citation></citation-alternatives></ref><ref id="cit96"><label>96</label><citation-alternatives><mixed-citation xml:lang="ru">Tian Y., Li M, Song W., Jiang R., Li Y.Q. Eff ects of probiotics on chemotherapy in patients with lung cancer. Oncol. Lett. 2019;17(3):2836–48. DOI: 10.3892/ol.2019.9906</mixed-citation><mixed-citation xml:lang="en">Tian Y., Li M, Song W., Jiang R., Li Y.Q. Eff ects of probiotics on chemotherapy in patients with lung cancer. Oncol. Lett. 2019;17(3):2836–48. DOI: 10.3892/ol.2019.9906</mixed-citation></citation-alternatives></ref><ref id="cit97"><label>97</label><citation-alternatives><mixed-citation xml:lang="ru">Riehl T.E., Alvarado D., Ee X. et al. Lactobacillus rhamnosus GG protects the intestinal epithelium from radiation injury through release of lipoteichoic acid, macrophage activation and the migration of mesenchymal stem cells. Gut. 2019;68(6):1003–13. DOI: 10.1136/gutjnl-2018-316226</mixed-citation><mixed-citation xml:lang="en">Riehl T.E., Alvarado D., Ee X. et al. Lactobacillus rhamnosus GG protects the intestinal epithelium from radiation injury through release of lipoteichoic acid, macrophage activation and the migration of mesenchymal stem cells. Gut. 2019;68(6):1003–13. DOI: 10.1136/gutjnl-2018-316226</mixed-citation></citation-alternatives></ref><ref id="cit98"><label>98</label><citation-alternatives><mixed-citation xml:lang="ru">Huda M.N., Lewis Z., Kalanetra K.M. et al. Stool microbiota and vaccine responses of infants. Pediatrics. 2014;134(2):e362–72.</mixed-citation><mixed-citation xml:lang="en">Huda M.N., Lewis Z., Kalanetra K.M. et al. Stool microbiota and vaccine responses of infants. Pediatrics. 2014;134(2):e362–72.</mixed-citation></citation-alternatives></ref><ref id="cit99"><label>99</label><citation-alternatives><mixed-citation xml:lang="ru">Harris V., Armah G., Fuentes S. et al. The infant gut microbiome correlates signifi cantly with rotavirus vaccine response in rural Ghana. J. Infect. Dis. 2016;215:34–41.</mixed-citation><mixed-citation xml:lang="en">Harris V., Armah G., Fuentes S. et al. The infant gut microbiome correlates signifi cantly with rotavirus vaccine response in rural Ghana. J. Infect. Dis. 2016;215:34–41.</mixed-citation></citation-alternatives></ref><ref id="cit100"><label>100</label><citation-alternatives><mixed-citation xml:lang="ru">Eloe‐Fadrosh E.A., McArthur M.A., Seekatz A.M., Drabek E.F., Rasko D.A., Sztein M.B. et al. Impact of oral typhoid vaccination on the human gut microbiota and correlations with S. Typhi‐specific immunological responses. PLoS One. 2013;8(4):e62026.</mixed-citation><mixed-citation xml:lang="en">Eloe‐Fadrosh E.A., McArthur M.A., Seekatz A.M., Drabek E.F., Rasko D.A., Sztein M.B. et al. Impact of oral typhoid vaccination on the human gut microbiota and correlations with S. Typhi‐specific immunological responses. PLoS One. 2013;8(4):e62026.</mixed-citation></citation-alternatives></ref><ref id="cit101"><label>101</label><citation-alternatives><mixed-citation xml:lang="ru">Fung T.C., Olson C.A., Hsiao E.Y. Interactions between the microbiota, immune and nervous systems in health and disease. Nat. Neurosci. 2017;20(2):145–55. DOI: 10.1038/nn.4476</mixed-citation><mixed-citation xml:lang="en">Fung T.C., Olson C.A., Hsiao E.Y. Interactions between the microbiota, immune and nervous systems in health and disease. Nat. Neurosci. 2017;20(2):145–55. DOI: 10.1038/nn.4476</mixed-citation></citation-alternatives></ref><ref id="cit102"><label>102</label><citation-alternatives><mixed-citation xml:lang="ru">Miyamoto J., Mizukure T., Park S.‐B. et al. A gut microbial metabolite of linoleic acid, 10‐hydroxy‐cis‐12‐octadecenoic acid, ameliorates intestinal epithelial barrier impairment partially via GPR40‐MEK‐ERK pathway. J. Biol. Chem. 2015;290(5):2902–18.</mixed-citation><mixed-citation xml:lang="en">Miyamoto J., Mizukure T., Park S.‐B. et al. A gut microbial metabolite of linoleic acid, 10‐hydroxy‐cis‐12‐octadecenoic acid, ameliorates intestinal epithelial barrier impairment partially via GPR40‐MEK‐ERK pathway. J. Biol. Chem. 2015;290(5):2902–18.</mixed-citation></citation-alternatives></ref><ref id="cit103"><label>103</label><citation-alternatives><mixed-citation xml:lang="ru">Thorburn A.N., McKenzie C.I., Shen S. et al. Evidence that asthma is a developmental origin disease infl uenced by maternal diet and bacterial metabolites. Nat. Commun. 2015;6(1):1–13.</mixed-citation><mixed-citation xml:lang="en">Thorburn A.N., McKenzie C.I., Shen S. et al. Evidence that asthma is a developmental origin disease infl uenced by maternal diet and bacterial metabolites. Nat. Commun. 2015;6(1):1–13.</mixed-citation></citation-alternatives></ref><ref id="cit104"><label>104</label><citation-alternatives><mixed-citation xml:lang="ru">Barnes E.M., Carter E.L., Lewis J.D. Predicting microbiome function across space is confounded by strain‐level diff erences and functional redundancy across taxa. Front Microbiol. 2020. Feb 7;11:101. DOI: 10.3389/fmicb.2020.00101</mixed-citation><mixed-citation xml:lang="en">Barnes E.M., Carter E.L., Lewis J.D. Predicting microbiome function across space is confounded by strain‐level diff erences and functional redundancy across taxa. Front Microbiol. 2020. Feb 7;11:101. DOI: 10.3389/fmicb.2020.00101</mixed-citation></citation-alternatives></ref><ref id="cit105"><label>105</label><citation-alternatives><mixed-citation xml:lang="ru">Olechnovich E.I., Lyamina S.V., Maev I.V. et al. Character of microbial engraftment following the fecal microbiota transplantation in patients with infl ammatory bowel diseases. Статья в открытом архиве №PPR412798 27.10.2021.</mixed-citation><mixed-citation xml:lang="en">Olechnovich E.I., Lyamina S.V., Maev I.V. et al. Character of microbial engraftment following the fecal microbiota transplantation in patients with infl ammatory bowel diseases. Статья в открытом архиве №PPR412798 27.10.2021.</mixed-citation></citation-alternatives></ref><ref id="cit106"><label>106</label><citation-alternatives><mixed-citation xml:lang="ru">Ma Z.S., Li L., Gotelli N.J. Diversity‐disease relationships and shared species analyses for human microbiome‐associated diseases. ISME J. 2019;13(8):1911–9. DOI: 10.1038/s41396-019-0395-y</mixed-citation><mixed-citation xml:lang="en">Ma Z.S., Li L., Gotelli N.J. Diversity‐disease relationships and shared species analyses for human microbiome‐associated diseases. ISME J. 2019;13(8):1911–9. DOI: 10.1038/s41396-019-0395-y</mixed-citation></citation-alternatives></ref><ref id="cit107"><label>107</label><citation-alternatives><mixed-citation xml:lang="ru">Nishida A., Inoue R., Inatomi O., Bamba S., Naito Y., Andoh A. Gut microbiota in the pathogenesis of infl ammatory bowel disease. Clin. J. Gastroenterol. 2018;11(1):1–10. DOI: 10.1007/s12328-017-0813-5</mixed-citation><mixed-citation xml:lang="en">Nishida A., Inoue R., Inatomi O., Bamba S., Naito Y., Andoh A. Gut microbiota in the pathogenesis of infl ammatory bowel disease. Clin. J. Gastroenterol. 2018;11(1):1–10. DOI: 10.1007/s12328-017-0813-5</mixed-citation></citation-alternatives></ref><ref id="cit108"><label>108</label><citation-alternatives><mixed-citation xml:lang="ru">Antharam V.C., Li E.C., Ishmael A. et al. Intestinal dysbiosis and depletion of butyrogenic bacteria in Clostridium diffi cile infection and nosocomial diarrhea. J. Clin. Microbiol. 2013;51(9):2884–92.</mixed-citation><mixed-citation xml:lang="en">Antharam V.C., Li E.C., Ishmael A. et al. Intestinal dysbiosis and depletion of butyrogenic bacteria in Clostridium diffi cile infection and nosocomial diarrhea. J. Clin. Microbiol. 2013;51(9):2884–92.</mixed-citation></citation-alternatives></ref><ref id="cit109"><label>109</label><citation-alternatives><mixed-citation xml:lang="ru">Cani PD., Bibiloni R., Knauf C. et al. Changes in gut microbiota control metabolic endotoxemia‐induced infl ammation in high‐fat diet‐induced obesity and diabetes in mice. Diabetes. 2008;57(6):1470–81. DOI: 10.2337/db07-1403</mixed-citation><mixed-citation xml:lang="en">Cani PD., Bibiloni R., Knauf C. et al. Changes in gut microbiota control metabolic endotoxemia‐induced infl ammation in high‐fat diet‐induced obesity and diabetes in mice. Diabetes. 2008;57(6):1470–81. DOI: 10.2337/db07-1403</mixed-citation></citation-alternatives></ref><ref id="cit110"><label>110</label><citation-alternatives><mixed-citation xml:lang="ru">Gulliver E.L., Young R.B., Chonwerawong M. et al. Review article: the future of microbiome-based therapeutics. Aliment. Pharmacol. Ther. 2022;56(2):192–208. DOI: 10.1111/apt.17049</mixed-citation><mixed-citation xml:lang="en">Gulliver E.L., Young R.B., Chonwerawong M. et al. Review article: the future of microbiome-based therapeutics. Aliment. Pharmacol. Ther. 2022;56(2):192–208. DOI: 10.1111/apt.17049</mixed-citation></citation-alternatives></ref></ref-list><fn-group><fn fn-type="conflict"><p>The authors declare that there are no conflicts of interest present.</p></fn></fn-group></back></article>
